Sequenzmeldevorgang (NotificationBundleSequence)

https://demis.rki.de/fhir/StructureDefinition/NotificationBundleSequence

Der Sequenzmeldevorgang ist vom Meldevorgang abgeleitet und bildet den Container für eine Sequenzmeldung (Sequenzübermittlung) und die darin referenzierten Ressourcen.

Profilansicht

versionIdΣ0..1id
lastUpdatedΣ0..1instant
sourceΣ0..1uri
profileΣ1..1canonical(http://hl7.org/fhir/StructureDefinition/StructureDefinition)Fixed Value
securityΣ0..*CodingBinding
tagΣ0..*Coding
useΣ ?!0..1codeBinding
typeΣ0..1CodeableConceptBinding
systemΣ1..1uriFixed Value
valueΣ1..1string
periodΣ I0..1Period
assignerΣ I0..1Reference(http://hl7.org/fhir/StructureDefinition/Organization)
typeΣ1..1codeBindingFixed Value
timestampΣ0..1instant
totalΣ I0..1unsignedInt
relationΣ1..1string
urlΣ1..1uri
fullUrlΣ0..1uri
resourceΣ0..1Resource
modeΣ0..1codeBinding
scoreΣ0..1decimal
methodΣ1..1codeBinding
urlΣ1..1uri
ifNoneMatchΣ0..1string
ifModifiedSinceΣ0..1instant
ifMatchΣ0..1string
ifNoneExistΣ0..1string
statusΣ1..1string
locationΣ0..1uri
etagΣ0..1string
lastModifiedΣ0..1instant
outcomeΣ0..1Resource
fullUrlΣ0..1uri
resourceΣ1..1Sequenzmeldung
modeΣ0..1codeBinding
scoreΣ0..1decimal
methodΣ1..1codeBinding
urlΣ1..1uri
ifNoneMatchΣ0..1string
ifModifiedSinceΣ0..1instant
ifMatchΣ0..1string
ifNoneExistΣ0..1string
statusΣ1..1string
locationΣ0..1uri
etagΣ0..1string
lastModifiedΣ0..1instant
outcomeΣ0..1Resource
signatureΣ0..1Signature

Beispiele

<Bundle xmlns="http://hl7.org/fhir">
    <meta>
        <lastUpdated value="2023-01-14T08:16:01.000+01:00" />
        <profile value="https://demis.rki.de/fhir/StructureDefinition/NotificationBundleSequence" />
    </meta>
    <identifier>
        <system value="https://demis.rki.de/fhir/NamingSystem/NotificationBundleId" />
        <value value="fb8d651b-3305-34b9-9e7f-a7809b62767d" />
    </identifier>
    <type value="document" />
    <timestamp value="2023-01-14T08:16:01.000+01:00" />
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Composition/4a19589d-3ae8-3439-baea-b2e0f60a98b2" />
        <resource>
            <Composition>
                <id value="4a19589d-3ae8-3439-baea-b2e0f60a98b2" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotificationSequence" />
                </meta>
                <identifier>
                    <system value="https://demis.rki.de/fhir/NamingSystem/NotificationId" />
                    <value value="d1c9252a-9809-4f17-bc59-16d6b2abaaae" />
                </identifier>
                <status value="final" />
                <type>
                    <coding>
                        <system value="http://loinc.org" />
                        <code value="34782-3" />
                        <display value="Infectious disease Note" />
                    </coding>
                </type>
                <category>
                    <coding>
                        <system value="http://loinc.org" />
                        <code value="11502-2" />
                        <display value="Laboratory report" />
                    </coding>
                </category>
                <subject>
                    <reference value="Patient/3661f735-d3db-3c22-909d-3a16a7334c1d" />
                </subject>
                <date value="2023-01-14T08:16:00.000+01:00" />
                <author>
                    <reference value="PractitionerRole/c92c9646-e0c8-3c3d-840c-33e505648a5c" />
                </author>
                <title value="Sequenzmeldung" />
                <relatesTo>
                    <code value="appends" />
                    <targetReference>
                        <type value="Composition" />
                        <identifier>
                            <system value="https://demis.rki.de/fhir/NamingSystem/NotificationId" />
                            <value value="f8585efb-1872-4a4f-b88d-8c889e93487b" />
                        </identifier>
                    </targetReference>
                </relatesTo>
                <section>
                    <code>
                        <coding>
                            <system value="http://loinc.org" />
                            <code value="11502-2" />
                            <display value="Laboratory report" />
                        </coding>
                    </code>
                    <entry>
                        <reference value="DiagnosticReport/2e24f26e-c450-301c-ac1e-da2205a69e39" />
                    </entry>
                </section>
            </Composition>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Patient/3661f735-d3db-3c22-909d-3a16a7334c1d" />
        <resource>
            <Patient>
                <id value="3661f735-d3db-3c22-909d-3a16a7334c1d" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonNotByName" />
                </meta>
                <gender value="male" />
                <birthDate value="1978-12" />
                <address>
                    <extension url="https://demis.rki.de/fhir/StructureDefinition/AddressUse">
                        <valueCoding>
                            <system value="https://demis.rki.de/fhir/CodeSystem/addressUse" />
                            <code value="primary" />
                        </valueCoding>
                    </extension>
                    <postalCode value="130" />
                </address>
            </Patient>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/PractitionerRole/c92c9646-e0c8-3c3d-840c-33e505648a5c" />
        <resource>
            <PractitionerRole>
                <id value="c92c9646-e0c8-3c3d-840c-33e505648a5c" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifierRole" />
                </meta>
                <organization>
                    <reference value="Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82" />
                </organization>
            </PractitionerRole>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82" />
        <resource>
            <Organization>
                <id value="227a66a4-a2fe-34b9-ad24-55981d0d1d82" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifierFacility" />
                </meta>
                <identifier>
                    <system value="https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId" />
                    <value value="10285" />
                </identifier>
                <type>
                    <coding>
                        <system value="https://demis.rki.de/fhir/CodeSystem/organizationType" />
                        <code value="refLab" />
                        <display value="Einrichtung der Spezialdiagnostik" />
                    </coding>
                </type>
                <name value="Nationales Referenzzentrum f&#252;r Influenza, FG17, RKI" />
                <telecom>
                    <system value="email" />
                    <value value="NRZ-Influenza@rki.de" />
                    <use value="work" />
                </telecom>
                <address>
                    <line value="Seestr. 10" />
                    <city value="Berlin" />
                    <postalCode value="13353" />
                    <country value="20422" />
                </address>
            </Organization>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/PractitionerRole/d1b92d45-3811-3064-bad7-b3336e70e08c" />
        <resource>
            <PractitionerRole>
                <id value="d1b92d45-3811-3064-bad7-b3336e70e08c" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/SubmittingRole" />
                </meta>
                <organization>
                    <reference value="Organization/a42f380e-b23a-3f50-a096-26665a6e4257" />
                </organization>
            </PractitionerRole>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Organization/a42f380e-b23a-3f50-a096-26665a6e4257" />
        <resource>
            <Organization>
                <id value="a42f380e-b23a-3f50-a096-26665a6e4257" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/SubmittingFacility" />
                </meta>
                <identifier>
                    <system value="https://fhir.kbv.de/NamingSystem/KBV_NS_Base_BSNR" />
                    <value value="987654321" />
                </identifier>
                <name value="Prim&#228;rlabor" />
                <telecom>
                    <system value="phone" />
                    <value value="03098765410" />
                    <use value="work" />
                </telecom>
                <telecom>
                    <system value="fax" />
                    <value value="03098765411" />
                    <use value="work" />
                </telecom>
                <telecom>
                    <system value="email" />
                    <value value="ifsg@primaerlabor-gibt-es-nicht.de" />
                    <use value="work" />
                </telecom>
                <telecom>
                    <system value="url" />
                    <value value="http://primaerlabor-gibt-es-nicht.de" />
                    <use value="work" />
                </telecom>
                <address>
                    <line value="Dingsweg 321" />
                    <city value="Berlin" />
                    <postalCode value="13055" />
                    <country value="20422" />
                </address>
                <contact>
                    <name>
                        <use value="official" />
                        <family value="Kontakt" />
                        <given value="Caroline" />
                    </name>
                </contact>
            </Organization>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/DiagnosticReport/2e24f26e-c450-301c-ac1e-da2205a69e39" />
        <resource>
            <DiagnosticReport>
                <id value="2e24f26e-c450-301c-ac1e-da2205a69e39" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/LaboratoryReportSequence" />
                </meta>
                <status value="final" />
                <code>
                    <coding>
                        <system value="https://demis.rki.de/fhir/CodeSystem/notificationCategory" />
                        <code value="cvdp" />
                        <display value="Severe-Acute-Respiratory-Syndrome-Coronavirus-2 (SARS-CoV-2)" />
                    </coding>
                </code>
                <subject>
                    <reference value="Patient/3661f735-d3db-3c22-909d-3a16a7334c1d" />
                </subject>
                <issued value="2023-01-14T08:15:00.000+01:00" />
                <result>
                    <reference value="Observation/30aefd63-f71c-39b2-9191-8c162310c9c2" />
                </result>
                <conclusion value="NACHWEIS eines meldepflichtigen Erregers" />
                <conclusionCode>
                    <coding>
                        <system value="https://demis.rki.de/fhir/CodeSystem/conclusionCode" />
                        <code value="pathogenDetected" />
                        <display value="Meldepflichtiger Erreger nachgewiesen" />
                    </coding>
                </conclusionCode>
            </DiagnosticReport>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Observation/30aefd63-f71c-39b2-9191-8c162310c9c2" />
        <resource>
            <Observation>
                <id value="30aefd63-f71c-39b2-9191-8c162310c9c2" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/PathogenDetectionSequence" />
                </meta>
                <status value="final" />
                <category>
                    <coding>
                        <system value="http://terminology.hl7.org/CodeSystem/observation-category" />
                        <code value="laboratory" />
                    </coding>
                </category>
                <code>
                    <coding>
                        <system value="http://loinc.org" />
                        <code value="96741-4" />
                        <display value="SARS-CoV-2 (COVID-19) variant Sequencing Nom (Specimen)" />
                    </coding>
                </code>
                <subject>
                    <reference value="Patient/3661f735-d3db-3c22-909d-3a16a7334c1d" />
                </subject>
                <valueString value="BA.5.1.28" />
                <interpretation>
                    <coding>
                        <system value="http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" />
                        <code value="POS" />
                    </coding>
                </interpretation>
                <method>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="117040002" />
                        <display value="Nucleic acid sequencing (procedure)" />
                    </coding>
                </method>
                <specimen>
                    <reference value="Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97" />
                </specimen>
                <device>
                    <reference value="Device/b075aba8-edcb-38f7-973a-6ba64b240a3e" />
                </device>
                <derivedFrom>
                    <reference value="MolecularSequence/26038f18-8c2d-3ad7-90e6-f52cfd779262" />
                </derivedFrom>
            </Observation>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97" />
        <resource>
            <Specimen>
                <id value="43b3b82f-656f-3e3d-a510-0109771c9e97" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/SpecimenSequence" />
                </meta>
                <status value="available" />
                <type>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="258604001" />
                        <display value="Upper respiratory specimen (specimen)" />
                    </coding>
                </type>
                <subject>
                    <reference value="Patient/3661f735-d3db-3c22-909d-3a16a7334c1d" />
                </subject>
                <receivedTime value="2022-12-29T15:40:00.000+01:00" />
                <collection>
                    <collector>
                        <reference value="PractitionerRole/d1b92d45-3811-3064-bad7-b3336e70e08c" />
                    </collector>
                    <collectedDateTime value="2022-12-29T09:50:00.000+01:00" />
                </collection>
                <processing>
                    <description value="ARTICv4" />
                    <procedure>
                        <coding>
                            <system value="https://demis.rki.de/fhir/CodeSystem/sequencingStrategy" />
                            <code value="amplicon" />
                        </coding>
                    </procedure>
                    <timeDateTime value="2023-01-13T10:40:00.000+01:00" />
                </processing>
            </Specimen>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Device/b075aba8-edcb-38f7-973a-6ba64b240a3e" />
        <resource>
            <Device>
                <id value="b075aba8-edcb-38f7-973a-6ba64b240a3e" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/SequencingDevice" />
                </meta>
                <deviceName>
                    <name value="GridION" />
                    <type value="model-name" />
                </deviceName>
                <type>
                    <coding>
                        <system value="https://demis.rki.de/fhir/CodeSystem/sequencingPlatform" />
                        <code value="oxford_nanopore" />
                        <display value="Oxford Nanopore platform type. nanopore-based electronic single molecule analysis." />
                    </coding>
                </type>
            </Device>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/MolecularSequence/26038f18-8c2d-3ad7-90e6-f52cfd779262" />
        <resource>
            <MolecularSequence>
                <id value="26038f18-8c2d-3ad7-90e6-f52cfd779262" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/Sequence" />
                </meta>
                <extension url="https://demis.rki.de/fhir/StructureDefinition/SequenceAuthor">
                    <valueString value="Ralf D&#252;rrwald, Stephan Fuchs, Stefan Kroeger, Marianne Wedde, Oliver Drechsel, Aleksandar Radonic, Rene Kmiecinski, Thorsten Wolff" />
                </extension>
                <extension url="https://demis.rki.de/fhir/StructureDefinition/SequencingReason">
                    <valueCoding>
                        <system value="http://snomed.info/sct" />
                        <code value="255226008" />
                        <display value="Random (qualifier value)" />
                    </valueCoding>
                </extension>
                <extension url="https://demis.rki.de/fhir/StructureDefinition/SequenceDocumentReference">
                    <valueReference>
                        <reference value="https://demis.rki.de/fhir/DocumentReference/ecd3f1f0-b6b6-46e0-b721-2d9869ab8195" />
                        <type value="DocumentReference" />
                    </valueReference>
                </extension>
                <identifier>
                    <value value="A384" />
                </identifier>
                <type value="dna" />
                <coordinateSystem value="0" />
                <specimen>
                    <reference value="Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97" />
                </specimen>
                <device>
                    <reference value="Device/b075aba8-edcb-38f7-973a-6ba64b240a3e" />
                </device>
                <performer>
                    <reference value="Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82" />
                </performer>
                <repository>
                    <extension url="https://demis.rki.de/fhir/StructureDefinition/SequenceUploadDate">
                        <valueDateTime value="2023-02-10" />
                    </extension>
                    <extension url="https://demis.rki.de/fhir/StructureDefinition/SequenceUploadSubmitter">
                        <valueString value="O Drechsel" />
                    </extension>
                    <extension url="https://demis.rki.de/fhir/StructureDefinition/SequenceUploadStatus">
                        <valueCoding>
                            <system value="http://snomed.info/sct" />
                            <code value="385645004" />
                        </valueCoding>
                    </extension>
                    <type value="other" />
                    <name value="gisaid" />
                    <datasetId value="EPI_ISL_16883504" />
                </repository>
            </MolecularSequence>
        </resource>
    </entry>
</Bundle>
<Bundle xmlns="http://hl7.org/fhir">
    <meta>
        <lastUpdated value="2022-10-23T10:16:01.000+01:00" />
        <profile value="https://demis.rki.de/fhir/StructureDefinition/NotificationBundleSequence" />
    </meta>
    <identifier>
        <system value="https://demis.rki.de/fhir/NamingSystem/NotificationBundleId" />
        <value value="1340e888-09fc-307e-8cf7-89a82a2da82f" />
    </identifier>
    <type value="document" />
    <timestamp value="2022-10-23T10:16:01.000+01:00" />
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Composition/75d18444-d984-339c-b748-45bed5036792" />
        <resource>
            <Composition>
                <id value="75d18444-d984-339c-b748-45bed5036792" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotificationSequence" />
                </meta>
                <identifier>
                    <system value="https://demis.rki.de/fhir/NamingSystem/NotificationId" />
                    <value value="2e7e9312-5252-4b5d-bdd0-16c0119f6d54" />
                </identifier>
                <status value="final" />
                <type>
                    <coding>
                        <system value="http://loinc.org" />
                        <code value="34782-3" />
                        <display value="Infectious disease Note" />
                    </coding>
                </type>
                <category>
                    <coding>
                        <system value="http://loinc.org" />
                        <code value="11502-2" />
                        <display value="Laboratory report" />
                    </coding>
                </category>
                <subject>
                    <reference value="Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92" />
                </subject>
                <date value="2022-10-23T10:16:00.000+01:00" />
                <author>
                    <reference value="PractitionerRole/2cbbb5e7-8c23-353b-92bf-6e155d129a72" />
                </author>
                <title value="Sequenzmeldung" />
                <relatesTo>
                    <code value="appends" />
                    <targetReference>
                        <type value="Composition" />
                        <identifier>
                            <system value="https://demis.rki.de/fhir/NamingSystem/NotificationId" />
                            <value value="a26de91b-1911-4e32-a9f4-6778e65dc122" />
                        </identifier>
                    </targetReference>
                </relatesTo>
                <section>
                    <code>
                        <coding>
                            <system value="http://loinc.org" />
                            <code value="11502-2" />
                            <display value="Laboratory report" />
                        </coding>
                    </code>
                    <entry>
                        <reference value="DiagnosticReport/afecda26-7a3d-3f9d-8870-5d7657472cd6" />
                    </entry>
                </section>
            </Composition>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92" />
        <resource>
            <Patient>
                <id value="bc6fd419-e020-3294-90a5-4975bb0a2d92" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonNotByName" />
                </meta>
                <gender value="female" />
                <birthDate value="2011-01" />
                <address>
                    <extension url="https://demis.rki.de/fhir/StructureDefinition/AddressUse">
                        <valueCoding>
                            <system value="https://demis.rki.de/fhir/CodeSystem/addressUse" />
                            <code value="primary" />
                        </valueCoding>
                    </extension>
                    <postalCode value="123" />
                </address>
            </Patient>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/PractitionerRole/2cbbb5e7-8c23-353b-92bf-6e155d129a72" />
        <resource>
            <PractitionerRole>
                <id value="2cbbb5e7-8c23-353b-92bf-6e155d129a72" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifierRole" />
                </meta>
                <organization>
                    <reference value="Organization/08c4e143-1125-3f11-a1d5-1586fc5e2e31" />
                </organization>
            </PractitionerRole>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/Organization/08c4e143-1125-3f11-a1d5-1586fc5e2e31" />
        <resource>
            <Organization>
                <id value="08c4e143-1125-3f11-a1d5-1586fc5e2e31" />
                <meta>
                    <profile value="https://demis.rki.de/fhir/StructureDefinition/NotifierFacility" />
                </meta>
                <identifier>
                    <system value="https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId" />
                    <value value="10565" />
                </identifier>
                <type>
                    <coding>
                        <system value="https://demis.rki.de/fhir/CodeSystem/organizationType" />
                        <code value="refLab" />
                        <display value="Einrichtung der Spezialdiagnostik" />
                    </coding>
                </type>
                <name value="Forschungszentrum Borstel" />
                <telecom>
                    <system value="phone" />
                    <value value="+49 (0) 4537 / 188-0" />
                    <use value="work" />
                </telecom>
                <address>
                    <line value="Parkallee 1" />
                    <city value="Borstel" />
                    <postalCode value="23845" />
                    <country value="20422" />
                </address>
            </Organization>
        </resource>
    </entry>
    <entry>
        <fullUrl value="https://demis.rki.de/fhir/PractitionerRole/c9749945-7b6e-39a6-a117-422d4661bb3a" />
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