Sequenz (Sequence)

https://demis.rki.de/fhir/StructureDefinition/Sequence

Die Sequenz umfasst Informationen zu einer biologischen Sequenz, hier DNA-Sequenz. Es kann sich hierbei auch um Sequenzrohdaten oder assemblierte Daten handeln, jeweils mit den dazugehörigen Metadaten (z.B. Datum der Probennahme, Sequenzierungsgerät, Adapter für die Library Preparation, Upload in eine Online-Datenbank (Repositorium), etc.) handeln.

Profilansicht

MolecularSequence			MolecularSequence	There are no (further) constraints on this element Data Type MolecularSequence
extension		0..		There are no (further) constraints on this element Element Id MolecularSequence.extension Sliced: Unordered, Open, by url(Value)
sequenceAuthor	S	0..1	Extension(stringHumanName)	There are no (further) constraints on this element Element Id MolecularSequence.extension:sequenceAuthor Short description Person/Labors, die/das verantwortlich für die Sequenz ist Definition Person/Labors, die/das verantwortlich für die Sequenz ist Data Type Extension(stringHumanName) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequenceAuthor
sequencingReason	S	0..1	Extension(Coding)	There are no (further) constraints on this element Element Id MolecularSequence.extension:sequencingReason Short description Grund der Sequenzierung der Probe Definition Grund der Sequenzierung der Probe Data Type Extension(Coding) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequencingReason
sequenceDocumentReference	S	1..	Extension(Reference(Sequenz-Dokument))	There are no (further) constraints on this element Element Id MolecularSequence.extension:sequenceDocumentReference Short description Referenz auf die Sequenz Definition Referenz auf die Sequenz Data Type Extension(Reference(Sequenz-Dokument)) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequenceDocumentReference
identifier	S	1..1		There are no (further) constraints on this element Element Id MolecularSequence.identifier Short description Laboreigener Identifier der Probe Definition Eineindeutiger Identifier der Probe, die vom einreichenden Labor verwendet wird.
type	S		Fixed Value	There are no (further) constraints on this element Element Id MolecularSequence.type Fixed Value dna
patient		..0		There are no (further) constraints on this element Element Id MolecularSequence.patient
specimen		1..	Reference(https://demis.rki.de/fhir/StructureDefinition/Specimen)	There are no (further) constraints on this element Element Id MolecularSequence.specimen Short description Verweis auf die Probe Definition Verweis auf die Probe Data Type Reference(https://demis.rki.de/fhir/StructureDefinition/Specimen) Allowed aggregation: bundled
reference		1..		There are no (further) constraints on this element Element Id MolecularSequence.specimen.reference
device	S	1..	Reference(Sequenziergerät)	There are no (further) constraints on this element Element Id MolecularSequence.device Short description Verweis auf das Sequenziergerät Definition Verweis auf das Sequenziergerät Data Type Reference(Sequenziergerät) Allowed aggregation: bundled
reference		1..		There are no (further) constraints on this element Element Id MolecularSequence.device.reference
performer	S	1..	Reference(https://demis.rki.de/fhir/StructureDefinition/NotifierFacility)	There are no (further) constraints on this element Element Id MolecularSequence.performer Short description Verweis auf die Melder-Einrichtung Definition Verweis auf die Melder-Einrichtung Data Type Reference(https://demis.rki.de/fhir/StructureDefinition/NotifierFacility) Allowed aggregation: bundled
reference		1..		There are no (further) constraints on this element Element Id MolecularSequence.performer.reference
quantity		..0		There are no (further) constraints on this element Element Id MolecularSequence.quantity
referenceSeq		..0		There are no (further) constraints on this element Element Id MolecularSequence.referenceSeq
variant		..0		There are no (further) constraints on this element Element Id MolecularSequence.variant
observedSeq		..0		There are no (further) constraints on this element Element Id MolecularSequence.observedSeq
quality		..0		There are no (further) constraints on this element Element Id MolecularSequence.quality
readCoverage		..0		There are no (further) constraints on this element Element Id MolecularSequence.readCoverage
repository	S			There are no (further) constraints on this element Element Id MolecularSequence.repository Short description Repositorium Definition Repositorium, in welches die Sequenz hochgeladen wird
extension		0..		There are no (further) constraints on this element Element Id MolecularSequence.repository.extension Sliced: Unordered, Open, by url(Value)
sequenceUploadDate	S	0..1	Extension(dateTime)	There are no (further) constraints on this element Element Id MolecularSequence.repository.extension:sequenceUploadDate Short description Datums des Sequenz-Uploads Data Type Extension(dateTime) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequenceUploadDate
sequenceUploadSubmitter	S	0..1	Extension(stringHumanName)	There are no (further) constraints on this element Element Id MolecularSequence.repository.extension:sequenceUploadSubmitter Short description Verantwortliche/es Person/Labor für den Sequenz-Upload Data Type Extension(stringHumanName) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequenceUploadSubmitter
sequenceUploadStatus	S	0..1	Extension(Coding)	There are no (further) constraints on this element Element Id MolecularSequence.repository.extension:sequenceUploadStatus Short description Status des Sequenz-Uploads Data Type Extension(Coding) Extension URL https://demis.rki.de/fhir/StructureDefinition/SequenceUploadStatus
type	S			There are no (further) constraints on this element Element Id MolecularSequence.repository.type
url	S			There are no (further) constraints on this element Element Id MolecularSequence.repository.url Short description Hyperlink auf die Sequenz im Repositorium Definition Hyperlink auf die Sequenz im Repositorium
name	S		Binding	There are no (further) constraints on this element Element Id MolecularSequence.repository.name Short description Name des Repositoriums Definition Name des Repositoriums, in welches die Sequenz hochgeladen wird. Der Wert muss entsprechend des vom RKI definierten ValueSets (https://demis.rki.de/fhir/ValueSet/repositoryName) im coding Element dargestellt werden. Binding RepositoryName (required)
datasetId	S			There are no (further) constraints on this element Element Id MolecularSequence.repository.datasetId Short description Identifier der Sequenz im Repositorium Definition Identifier der Sequenz im Repositorium
pointer		..0		There are no (further) constraints on this element Element Id MolecularSequence.pointer
structureVariant		..0		There are no (further) constraints on this element Element Id MolecularSequence.structureVariant