Index

_

__init__() (mex.backend.cache.connector.CacheConnector method) (mex.backend.cache.connector.ValkeyCache method) (mex.backend.graph.connector.GraphConnector method) (mex.backend.graph.exceptions.GraphError method) (mex.backend.graph.models.Result method) (mex.backend.graph.query.Query method) (mex.backend.graph.query.QueryBuilder method) (mex.backend.identity.provider.GraphIdentityProvider method) _check_connectivity_and_authentication() (mex.backend.graph.connector.GraphConnector method) _check_match_preconditions_tx() (mex.backend.graph.connector.GraphConnector method)

_fetch_extracted_or_rule_items() (mex.backend.graph.connector.GraphConnector method) _fetch_or_insert_organization() (in module mex.backend.auxiliary.wikidata) _fetch_or_insert_primary_source() (in module mex.backend.auxiliary.primary_source) _get_ingest_query_for_entity_type() (mex.backend.graph.query.QueryBuilder method) _init_driver() (mex.backend.graph.connector.GraphConnector method) _match_item_tx() (mex.backend.graph.connector.GraphConnector method) _run_ingest_in_transaction() (mex.backend.graph.connector.GraphConnector method) _SearchResultReference (class in mex.backend.graph.transform) _seed_constraints() (mex.backend.graph.connector.GraphConnector method) _seed_data() (mex.backend.graph.connector.GraphConnector method) _seed_indices() (mex.backend.graph.connector.GraphConnector method)

A

ACCESS_PLATFORM (mex.backend.types.ReferenceFieldName attribute) ACCESS_SERVICE (mex.backend.types.ReferenceFieldName attribute) AccessLevel (class in mex.backend.types) AFFILIATION (mex.backend.types.ReferenceFieldName attribute) all() (mex.backend.graph.models.Result method) all_nested_labels (mex.backend.graph.models.IngestParams attribute)

all_referenced_labels (mex.backend.graph.models.IngestParams attribute) APIKey (class in mex.backend.types) APIKeyDatabase (class in mex.backend.types) APIUserDatabase (class in mex.backend.types) APIUserPassword (class in mex.backend.types) assign() (mex.backend.identity.provider.GraphIdentityProvider method) assign_identity() (in module mex.backend.identity.main)

B

backend_api_key_database (mex.backend.settings.BackendSettings attribute) backend_host (mex.backend.settings.BackendSettings attribute) backend_port (mex.backend.settings.BackendSettings attribute) backend_root_path (mex.backend.settings.BackendSettings attribute)

backend_user_database (mex.backend.settings.BackendSettings attribute) BackendError BackendSettings (class in mex.backend.settings) BELONGS_TO (mex.backend.types.ReferenceFieldName attribute)

C

CacheConnector (class in mex.backend.cache.connector) check_header_for_authorization_method() (in module mex.backend.security) check_system_status() (in module mex.backend.system.main) close() (mex.backend.cache.connector.CacheConnector method) (mex.backend.cache.connector.LocalCache method) (mex.backend.cache.connector.ValkeyCache method) (mex.backend.graph.connector.GraphConnector method) (mex.backend.graph.query.QueryBuilder method) (mex.backend.identity.provider.GraphIdentityProvider method)

commit() (mex.backend.graph.connector.GraphConnector method) CONTACT (mex.backend.types.ReferenceFieldName attribute) CONTAINED_BY (mex.backend.types.ReferenceFieldName attribute) CONTRIBUTING_UNIT (mex.backend.types.ReferenceFieldName attribute) CONTRIBUTOR (mex.backend.types.ReferenceFieldName attribute) create_and_get_rule_set() (in module mex.backend.rules.helpers) create_rule_set() (in module mex.backend.rules.main) createRels (mex.backend.graph.models.IngestData attribute) CREATOR (mex.backend.types.ReferenceFieldName attribute)

D

debug (mex.backend.exceptions.ErrorResponse attribute) DebuggingInfo (class in mex.backend.exceptions) DebuggingScope (class in mex.backend.exceptions) delete_item() (mex.backend.graph.connector.GraphConnector method) delete_merged_item() (in module mex.backend.merged.main) delete_merged_item_from_graph() (in module mex.backend.merged.helpers) delete_node_edges (mex.backend.graph.models.IngestParams attribute)

delete_rule_set() (in module mex.backend.rules.main) (mex.backend.graph.connector.GraphConnector method) delete_rule_set_from_graph() (in module mex.backend.rules.helpers) DeletionFailedError detach_node_edges (mex.backend.graph.models.IngestParams attribute) DetailedError (class in mex.backend.exceptions) DISTRIBUTION (mex.backend.types.ReferenceFieldName attribute) DynamicStrEnum (class in mex.backend.types)

E

EdgeExporter (class in mex.backend.graph.models) edgeLabel (mex.backend.graph.models.GraphRel attribute) edgeProps (mex.backend.graph.models.GraphRel attribute) EDITOR (mex.backend.types.ReferenceFieldName attribute) EDITOR_OF_SERIES (mex.backend.types.ReferenceFieldName attribute) entityType (mex.backend.graph.models.ExtractedPrimarySourceWithHardcodedIdentifiers attribute) (mex.backend.graph.models.IngestData attribute) ErrorResponse (class in mex.backend.exceptions) errors (mex.backend.exceptions.DebuggingInfo attribute) errors() (mex.backend.exceptions.BackendError method) (mex.backend.exceptions.DetailedError method) (mex.backend.graph.exceptions.GraphError method) exists_item() (mex.backend.graph.connector.GraphConnector method) expand_references_in_search_result() (in module mex.backend.graph.transform) EXTERNAL_ASSOCIATE (mex.backend.types.ReferenceFieldName attribute) EXTERNAL_PARTNER (mex.backend.types.ReferenceFieldName attribute) EXTRACTED_ACCESS_PLATFORM (mex.backend.types.ExtractedType attribute) EXTRACTED_ACTIVITY (mex.backend.types.ExtractedType attribute)

EXTRACTED_BIBLIOGRAPHIC_RESOURCE (mex.backend.types.ExtractedType attribute) EXTRACTED_CONSENT (mex.backend.types.ExtractedType attribute) EXTRACTED_CONTACT_POINT (mex.backend.types.ExtractedType attribute) EXTRACTED_DISTRIBUTION (mex.backend.types.ExtractedType attribute) EXTRACTED_ORGANIZATION (mex.backend.types.ExtractedType attribute) extracted_organization_rki() (in module mex.backend.auxiliary.wikidata) EXTRACTED_ORGANIZATIONAL_UNIT (mex.backend.types.ExtractedType attribute) extracted_organizational_units() (in module mex.backend.auxiliary.organigram) EXTRACTED_PERSON (mex.backend.types.ExtractedType attribute) EXTRACTED_PRIMARY_SOURCE (mex.backend.types.ExtractedType attribute) extracted_primary_source_ldap() (in module mex.backend.auxiliary.primary_source) extracted_primary_source_orcid() (in module mex.backend.auxiliary.primary_source) extracted_primary_source_organigram() (in module mex.backend.auxiliary.primary_source) extracted_primary_source_wikidata() (in module mex.backend.auxiliary.primary_source) EXTRACTED_RESOURCE (mex.backend.types.ExtractedType attribute) EXTRACTED_VARIABLE (mex.backend.types.ExtractedType attribute) EXTRACTED_VARIABLE_GROUP (mex.backend.types.ExtractedType attribute) ExtractedPrimarySourceWithHardcodedIdentifiers (class in mex.backend.graph.models) ExtractedType (class in mex.backend.types)

F

fetch() (mex.backend.identity.provider.GraphIdentityProvider method) fetch_extracted_item_by_source_identifiers() (in module mex.backend.auxiliary.utils) fetch_extracted_items() (mex.backend.graph.connector.GraphConnector method) fetch_identities() (mex.backend.graph.connector.GraphConnector method) fetch_identity() (in module mex.backend.identity.main) fetch_merged_items() (mex.backend.graph.connector.GraphConnector method)

fetch_rule_items() (mex.backend.graph.connector.GraphConnector method) flush() (mex.backend.cache.connector.CacheConnector method) (mex.backend.graph.connector.GraphConnector method) flush_graph_database() (in module mex.backend.testing.system) flushdb() (mex.backend.cache.connector.LocalCache method) (mex.backend.cache.connector.ValkeyCache method) FUNDER_OR_COMMISSIONER (mex.backend.types.ReferenceFieldName attribute)

G

get() (mex.backend.cache.connector.ValkeyCache method) get_error_details_from_neo4j_error() (in module mex.backend.graph.transform) get_extracted_item() (in module mex.backend.extracted.main) get_extracted_item_from_graph() (in module mex.backend.extracted.helpers) get_extracted_items_from_graph() (in module mex.backend.extracted.helpers) get_graph_rel_id() (in module mex.backend.graph.transform) get_merged_item() (in module mex.backend.merged.main) get_merged_item_from_graph() (in module mex.backend.merged.helpers) get_merged_person_from_login() (in module mex.backend.ldap.main) (in module mex.backend.testing.ldap) get_prometheus_metrics() (in module mex.backend.system.main) get_rule_set() (in module mex.backend.rules.main) get_rule_set_from_graph() (in module mex.backend.rules.helpers)

get_update_counters() (mex.backend.graph.models.Result method) get_value() (mex.backend.cache.connector.CacheConnector method) graph_db (mex.backend.settings.BackendSettings attribute) graph_password (mex.backend.settings.BackendSettings attribute) graph_session_timeout (mex.backend.settings.BackendSettings attribute) graph_tx_timeout (mex.backend.settings.BackendSettings attribute) graph_url (mex.backend.settings.BackendSettings attribute) graph_user (mex.backend.settings.BackendSettings attribute) GraphConnector (class in mex.backend.graph.connector) GraphError GraphIdentityProvider (class in mex.backend.identity.provider) GraphRel (class in mex.backend.graph.models) GraphStatus (class in mex.backend.system.models)

H

HAD_PRIMARY_SOURCE (mex.backend.types.ReferenceFieldName attribute) handle_detailed_error() (in module mex.backend.exceptions) handle_uncaught_exception() (in module mex.backend.exceptions) has_create_rels (mex.backend.graph.models.IngestParams attribute) HAS_DATA_SUBJECT (mex.backend.types.ReferenceFieldName attribute)

has_link_rels (mex.backend.graph.models.IngestParams attribute) has_read_access() (in module mex.backend.security) has_write_access() (in module mex.backend.security) has_write_access_ldap() (in module mex.backend.security) has_write_access_ldap_mocked() (in module mex.backend.testing.security) http_version (mex.backend.exceptions.DebuggingScope attribute)

I

identifier (mex.backend.graph.models.ExtractedPrimarySourceWithHardcodedIdentifiers attribute) (mex.backend.graph.models.IngestData attribute) InconsistentGraphError info() (mex.backend.cache.connector.LocalCache method) (mex.backend.cache.connector.ValkeyCache method) ingest_items() (in module mex.backend.ingest.main) (mex.backend.graph.connector.GraphConnector method) IngestData (class in mex.backend.graph.models)

IngestionError IngestParams (class in mex.backend.graph.models) INVOLVED_PERSON (mex.backend.types.ReferenceFieldName attribute) INVOLVED_UNIT (mex.backend.types.ReferenceFieldName attribute) IS_PART_OF (mex.backend.types.ReferenceFieldName attribute) IS_PART_OF_ACTIVITY (mex.backend.types.ReferenceFieldName attribute) is_retryable() (mex.backend.exceptions.BackendError method) (mex.backend.graph.exceptions.GraphError method)

L

label (mex.backend.graph.transform._SearchResultReference attribute) lifespan() (in module mex.backend.main)

linkRels (mex.backend.graph.models.IngestData attribute) LocalCache (class in mex.backend.cache.connector) log_notifications() (mex.backend.graph.models.Result method)

M

match_item() (in module mex.backend.match.main) (mex.backend.graph.connector.GraphConnector method) match_item_in_graph() (in module mex.backend.match.helpers) MatchingError MEMBER_OF (mex.backend.types.ReferenceFieldName attribute) merge_search_result_item() (in module mex.backend.merged.helpers) MERGED_ACCESS_PLATFORM (mex.backend.types.MergedType attribute) MERGED_ACTIVITY (mex.backend.types.MergedType attribute) MERGED_BIBLIOGRAPHIC_RESOURCE (mex.backend.types.MergedType attribute) MERGED_CONSENT (mex.backend.types.MergedType attribute) MERGED_CONTACT_POINT (mex.backend.types.MergedType attribute) MERGED_DISTRIBUTION (mex.backend.types.MergedType attribute) merged_label (mex.backend.graph.models.IngestParams attribute) MERGED_ORGANIZATION (mex.backend.types.MergedType attribute) MERGED_ORGANIZATIONAL_UNIT (mex.backend.types.MergedType attribute) MERGED_PERSON (mex.backend.types.MergedType attribute) MERGED_PRIMARY_SOURCE (mex.backend.types.MergedType attribute) MERGED_RESOURCE (mex.backend.types.MergedType attribute) MERGED_VARIABLE (mex.backend.types.MergedType attribute) MERGED_VARIABLE_GROUP (mex.backend.types.MergedType attribute) MergedType (class in mex.backend.types) message (mex.backend.exceptions.ErrorResponse attribute) metadata() (mex.backend.graph.models.IngestData method) method (mex.backend.exceptions.DebuggingScope attribute) metrics() (mex.backend.cache.connector.CacheConnector method) (mex.backend.identity.provider.GraphIdentityProvider method) mex module mex.backend module mex.backend.auxiliary module mex.backend.auxiliary.ldap module mex.backend.auxiliary.orcid module mex.backend.auxiliary.organigram module mex.backend.auxiliary.primary_source module mex.backend.auxiliary.utils module mex.backend.auxiliary.wikidata module mex.backend.cache module mex.backend.cache.connector module mex.backend.exceptions module mex.backend.extracted module mex.backend.extracted.helpers module mex.backend.extracted.main module mex.backend.graph module mex.backend.graph.connector module mex.backend.graph.exceptions module mex.backend.graph.models module mex.backend.graph.query module mex.backend.graph.transform module mex.backend.identity module mex.backend.identity.main module mex.backend.identity.provider module mex.backend.ingest module mex.backend.ingest.main module mex.backend.ldap module mex.backend.ldap.main module mex.backend.logging module mex.backend.main module mex.backend.match module mex.backend.match.helpers module mex.backend.match.main module mex.backend.merged module mex.backend.merged.helpers module mex.backend.merged.main module mex.backend.preview module

mex.backend.preview.main module mex.backend.rules module mex.backend.rules.helpers module mex.backend.rules.main module mex.backend.rules.transform module mex.backend.security module mex.backend.settings module mex.backend.system module mex.backend.system.main module mex.backend.system.models module mex.backend.testing module mex.backend.testing.ldap module mex.backend.testing.main module mex.backend.testing.security module mex.backend.testing.system module mex.backend.types module model_config (mex.backend.exceptions.DebuggingInfo attribute) (mex.backend.exceptions.DebuggingScope attribute) (mex.backend.exceptions.ErrorResponse attribute) (mex.backend.graph.models.ExtractedPrimarySourceWithHardcodedIdentifiers attribute) (mex.backend.graph.models.IngestData attribute) (mex.backend.graph.models.IngestParams attribute) (mex.backend.settings.BackendSettings attribute) (mex.backend.system.models.GraphStatus attribute) (mex.backend.system.models.SystemStatus attribute) (mex.backend.types.APIKeyDatabase attribute) (mex.backend.types.APIUserDatabase attribute) module mex mex.backend mex.backend.auxiliary mex.backend.auxiliary.ldap mex.backend.auxiliary.orcid mex.backend.auxiliary.organigram mex.backend.auxiliary.primary_source mex.backend.auxiliary.utils mex.backend.auxiliary.wikidata mex.backend.cache mex.backend.cache.connector mex.backend.exceptions mex.backend.extracted mex.backend.extracted.helpers mex.backend.extracted.main mex.backend.graph mex.backend.graph.connector mex.backend.graph.exceptions mex.backend.graph.models mex.backend.graph.query mex.backend.graph.transform mex.backend.identity mex.backend.identity.main mex.backend.identity.provider mex.backend.ingest mex.backend.ingest.main mex.backend.ldap mex.backend.ldap.main mex.backend.logging mex.backend.main mex.backend.match mex.backend.match.helpers mex.backend.match.main mex.backend.merged mex.backend.merged.helpers mex.backend.merged.main mex.backend.preview mex.backend.preview.main mex.backend.rules mex.backend.rules.helpers mex.backend.rules.main mex.backend.rules.transform mex.backend.security mex.backend.settings mex.backend.system mex.backend.system.main mex.backend.system.models mex.backend.testing mex.backend.testing.ldap mex.backend.testing.main mex.backend.testing.security mex.backend.testing.system mex.backend.types MultipleResultsFoundError

N

node_label (mex.backend.graph.models.IngestParams attribute) nodeLabels (mex.backend.graph.models.GraphRel attribute) nodeProps (mex.backend.graph.models.GraphRel attribute) (mex.backend.graph.models.IngestData attribute)

non_matchable_types (mex.backend.settings.BackendSettings attribute) NoResultFoundError

O

one() (mex.backend.graph.models.Result method)

one_or_none() (mex.backend.graph.models.Result method)

P

PARENT_UNIT (mex.backend.types.ReferenceFieldName attribute) path (mex.backend.exceptions.DebuggingScope attribute) path_params (mex.backend.exceptions.DebuggingScope attribute) position (mex.backend.graph.transform._SearchResultReference attribute)

preview_item() (in module mex.backend.preview.main) preview_items() (in module mex.backend.preview.main) PUBLICATION (mex.backend.types.ReferenceFieldName attribute) PUBLISHER (mex.backend.types.ReferenceFieldName attribute)

Q

Query (class in mex.backend.graph.query)

query_string (mex.backend.exceptions.DebuggingScope attribute) QueryBuilder (class in mex.backend.graph.query)

R

READ (mex.backend.types.AccessLevel attribute) read (mex.backend.types.APIKeyDatabase attribute) (mex.backend.types.APIUserDatabase attribute) ReferenceFieldName (class in mex.backend.types)

render() (mex.backend.graph.query.Query method) render_constraints() (in module mex.backend.graph.query) RESPONSIBLE_UNIT (mex.backend.types.ReferenceFieldName attribute) Result (class in mex.backend.graph.models)

S

scheme (mex.backend.exceptions.DebuggingScope attribute) scope (mex.backend.exceptions.DebuggingInfo attribute) search_extracted_items() (in module mex.backend.extracted.main) search_extracted_items_in_graph() (in module mex.backend.extracted.helpers) search_merged_items() (in module mex.backend.merged.main) search_merged_items_in_graph() (in module mex.backend.merged.helpers) search_organizations_in_wikidata() (in module mex.backend.auxiliary.wikidata) search_persons_in_orcid() (in module mex.backend.auxiliary.orcid) search_persons_or_contact_points_in_ldap() (in module mex.backend.auxiliary.ldap) (in module mex.backend.testing.ldap) set() (mex.backend.cache.connector.LocalCache method) (mex.backend.cache.connector.ValkeyCache method)

set_value() (mex.backend.cache.connector.CacheConnector method) sort_create_rels() (mex.backend.graph.models.IngestData class method) sort_link_rels() (mex.backend.graph.models.IngestData class method) STABLE_TARGET_ID (mex.backend.types.ReferenceFieldName attribute) stableTargetId (mex.backend.graph.models.ExtractedPrimarySourceWithHardcodedIdentifiers attribute) (mex.backend.graph.models.IngestData attribute) status (mex.backend.system.models.GraphStatus attribute) (mex.backend.system.models.SystemStatus attribute) SUCCEEDS (mex.backend.types.ReferenceFieldName attribute) SUPERSEDED_BY (mex.backend.types.ReferenceFieldName attribute) SystemStatus (class in mex.backend.system.models)

T

transform() (mex.backend.graph.models.EdgeExporter method)

transform_model_into_ingest_data() (in module mex.backend.graph.transform) transform_raw_rules_to_rule_set_response() (in module mex.backend.rules.transform)

U

UNIT_IN_CHARGE (mex.backend.types.ReferenceFieldName attribute) UNIT_OF (mex.backend.types.ReferenceFieldName attribute)

update_and_get_rule_set() (in module mex.backend.rules.helpers) update_rule_set() (in module mex.backend.rules.main) USED_IN (mex.backend.types.ReferenceFieldName attribute)

V

validate_ingested_data() (in module mex.backend.graph.transform) valkey_url (mex.backend.settings.BackendSettings attribute)

ValkeyCache (class in mex.backend.cache.connector) value (mex.backend.graph.transform._SearchResultReference attribute) version (mex.backend.system.models.SystemStatus attribute)

W

WAS_GENERATED_BY (mex.backend.types.ReferenceFieldName attribute) WRITE (mex.backend.types.AccessLevel attribute)

write (mex.backend.types.APIKeyDatabase attribute) (mex.backend.types.APIUserDatabase attribute)